Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPKKKVAGLIKLQIVAGQANPAPPVGPALGQHGVNIMEFCKAYNAATENQRGNVIPVEITVYEDRSFTFTLKTPPAAKLLLKAAGVAKGSAEPHKTKVAKVTWDQVREIAETKKTDLNANDVDAAAKIIAGTARSMGITVE
3CJS Chain:B ((2-72))
----KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTP-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3CJS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58294 for 495 contacts (-117.8/contact) +
2D Compatibility (PS) -8030 + (NN) -7083 + (LL) 5508
1D Compatibility (HY) -6800 + (ID) 2450
Total energy: -77149.0 ( -155.86 by residue)
QMean score : 0.749
(partial model without unconserved sides chains):
PDB file :
Tito_3CJS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJS-query.scw
PDB file :
Tito_Scwrl_3CJS.pdb
: