Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR------------------------GRADDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDEVFARALRALGK
4JLO Chain:B ((1-203))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVF--PKHGN-VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQKEDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG-
General information:
TITO was launched using:
RESULT:
Template:
4JLO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72978 for 1350 contacts (-54.1/contact) +
2D Compatibility (PS) -19823 + (NN) -15756 + (LL) -268
1D Compatibility (HY) -19200 + (ID) 4300
Total energy: -132325.0 ( -98.02 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_4JLO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLO-query.scw
PDB file :
Tito_Scwrl_4JLO.pdb
: