Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKP-GLRQAVNHLRAE-GFDVHSVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILANRLYVLPHAASRASIRRRFERIDRTFDEQAAEGWRH
3VDR Chain:C ((2-193))---LKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWG-RIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLV---------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3VDR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153305 for 1571 contacts (-97.6/contact) +
2D Compatibility (PS) -20398 + (NN) -3523 + (LL) 4696
1D Compatibility (HY) -9600 + (ID) 3400
Total energy: -185530.0 ( -118.10 by residue)
QMean score : 0.533

(partial model without unconserved sides chains):
PDB file : Tito_3VDR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VDR-query.scw
PDB file : Tito_Scwrl_3VDR.pdb: