Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQSDVGILRIGIGGGQTIDLNVLLSAAI-NFFLIAFAVYFLVVLPYNTLRKKGEVEQPGDTQVVLLTEIRDLLAQTNGDSPGRHGGRGTPSPTDGPRASTESQ
3DT5 Chain:A ((15-133))
RLKAIEDRLEK--------------FYIPLIKAFSSYVYTA---------QTEDEIETI-ITCRRYLAGNNLLRVLPMHF---KFKADKIAGSANWTFYAKEDFEQWKEALDVLWEEFLEVLKEYYTLS------GTEISLPEKPDWLIGYK
General information:
TITO was launched using:
RESULT:
Template:
3DT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29914 for 795 contacts (-37.6/contact) +
2D Compatibility (PS) -12253 + (NN) -3264 + (LL) 1708
1D Compatibility (HY) -4400 + (ID) 1300
Total energy: -49423.0 ( -62.17 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_3DT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DT5-query.scw
PDB file :
Tito_Scwrl_3DT5.pdb
: