Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTHR
3PZK Chain:B ((2-254))
-TYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQF---
General information:
TITO was launched using:
RESULT:
Template:
3PZK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127828 for 2059 contacts (-62.1/contact) +
2D Compatibility (PS) -27316 + (NN) -9355 + (LL) 404
1D Compatibility (HY) -30400 + (ID) 12650
Total energy: -207145.0 ( -100.60 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_3PZK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PZK-query.scw
PDB file :
Tito_Scwrl_3PZK.pdb
: