Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASLLNARTAVITGGAQGLGLAIGQRFVAEGARVVLGDVNLEATEVAAKRLGGDDVA--LAVRCDVTQADDVDILIRTAVERFG-GLDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAA-AIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGGRFI
2PD6 Chain:C ((8-256))
-------ALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLL------NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLF-
General information:
TITO was launched using:
RESULT:
Template:
2PD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125046 for 2045 contacts (-61.1/contact) +
2D Compatibility (PS) -24870 + (NN) -1618 + (LL) 784
1D Compatibility (HY) -16400 + (ID) 5100
Total energy: -172250.0 ( -84.23 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_2PD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PD6-query.scw
PDB file :
Tito_Scwrl_2PD6.pdb
: