Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT--MPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIEL--AAQGDFDKVVVNRRLESACAELVSLLVGTAPGSP
1Z6G Chain:A ((26-208))
-----------------------LVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFY--GTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLLNS-----
General information:
TITO was launched using:
RESULT:
Template:
1Z6G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91289 for 1280 contacts (-71.3/contact) +
2D Compatibility (PS) -19959 + (NN) -8961 + (LL) 332
1D Compatibility (HY) -17200 + (ID) 3150
Total energy: -140227.0 ( -109.55 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_1Z6G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z6G-query.scw
PDB file :
Tito_Scwrl_1Z6G.pdb
: