Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLPSLDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
2C9D Chain:H ((15-160))
--------ASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
General information:
TITO was launched using:
RESULT:
Template:
2C9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109495 for 1150 contacts (-95.2/contact) +
2D Compatibility (PS) -16472 + (NN) -11352 + (LL) 100
1D Compatibility (HY) -18000 + (ID) 7300
Total energy: -162519.0 ( -141.32 by residue)
QMean score : 0.665
(partial model without unconserved sides chains):
PDB file :
Tito_2C9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C9D-query.scw
PDB file :
Tito_Scwrl_2C9D.pdb
: