Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVALIWLIA---ALVLVGAEALTGDMFLLMLG-GGALAASVSS----------WLLA-WPMWADGAVFLLVSVLLLV-LVRPAVRRRL-TQTK--GVQLGIEALEGKKAVVLGRVARDGGQVKLDGQVWTARPLNDGDVFEPGDSVTVVQIDGATAVVFKDV---
2VLI Chain:A ((5-176))
--SPIIWINGPFTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDVNVGTVEDRLNELRGEQFQTHIDTAGLGTQQVAEQIAAQVGLTLAPP
General information:
TITO was launched using:
RESULT:
Template:
2VLI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99029 for 931 contacts (-106.4/contact) +
2D Compatibility (PS) -15429 + (NN) -5761 + (LL) 68
1D Compatibility (HY) 0 + (ID) 1350
Total energy: -121501.0 ( -130.51 by residue)
QMean score : 0.122
(partial model without unconserved sides chains):
PDB file :
Tito_2VLI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VLI-query.scw
PDB file :
Tito_Scwrl_2VLI.pdb
: