Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGDQELELRFDV-PLYTLAEAS-RYLVVPRATLATWADGYERRPANAPAVQG-QPIITAL-PHPTGSHARLPFVGIAEAYVLNAFRRAGVPMQRIRPSLDWLIKNVGPHALA----SQDLCTDGAEVLWRFA-ERSGEGSPDDLV--VRGLIVPRSGQYVFKEIVEHYLQQI-SFADDNLASMIRLPQYGDANVVLDPRRGYGQPVFDGSGVRVADVLGPLRAGATFQAVA-DDYGVTPDQ-LRDALDAIAA- |
| 4G3A Chain:A ((5-231)) | --KPSDLDGFIQQMP-----KADMR----VKVQLAEDLVTFLSDDTNSIVCTDMGFLIDGLMPWLTGSH---------FKIAQKSLEAFSELIKRLGSDFNAYTATVLPHVIDRLGDSRDTVREKAQLLLRDLMEH-RVLPPQALIDKLATSCFKHKNAKVREEFLQTIVNALHEYGTQQLSVRVYIPPV--CALLGDPT----VNVREAAIQTLVEIYKHVGDRLRPDLRRMDDVPASKLAMLEQKFDQVKLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4G3A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46281 for 1537 contacts (-30.1/contact) +
2D Compatibility (PS) -22336 + (NN) -4182 + (LL) 1996
1D Compatibility (HY) -10800 + (ID) 1850
Total energy: -83453.0 ( -54.30 by residue)
QMean score : 0.194
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