Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSATGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVVGLAVRPQHSMRGHTAFLVATRRLAPGAVAPAPLGRKREGRDG
5C0O Chain:F ((9-251))
--------------LKDRKGRAYLVFPKEGGVF-----SVPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMK---TPTAPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV--ENVRFHLGKL------EAAYDGVALDLMEPWKVL--AALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLE-RVLEVGWREWEVRLPVAHPRFQQVGHTAFLVALRR--------------------
General information:
TITO was launched using:
RESULT:
Template:
5C0O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161479 for 1709 contacts (-94.5/contact) +
2D Compatibility (PS) -24574 + (NN) -10432 + (LL) 804
1D Compatibility (HY) -12800 + (ID) 4600
Total energy: -213081.0 ( -124.68 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_5C0O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C0O-query.scw
PDB file :
Tito_Scwrl_5C0O.pdb
: