Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHLAADLLVALDRNHARLLRQLGVE-AARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
3ROF Chain:A ((9-150))
------VAFVCLGNICRSPMAEAIMRQRLKDRNIHD-IKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEF---SNMEESDVPDPYYTNN--FEGVYDMVLSSCDNLIDYI----------
General information:
TITO was launched using:
RESULT:
Template:
3ROF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97930 for 1181 contacts (-82.9/contact) +
2D Compatibility (PS) -15550 + (NN) -10555 + (LL) 236
1D Compatibility (HY) -13600 + (ID) 2450
Total energy: -139849.0 ( -118.42 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_3ROF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ROF-query.scw
PDB file :
Tito_Scwrl_3ROF.pdb
: