Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------MTINYQFGDVDAHGAMIRAQAGLLEA-----EHQAIVRDVLAAGDFWGGAGSVACQEFI-TQLGRNFQVIYEQANAHGQKVQAAGNNMAQTDSAVGSSWA
2JMH Chain:A ((1-117))
QEHKPKKDDFRNEFDHLLIEQANHAIEKGEHQLLYLQHQLDELNENKSKELQEKIIRELDVVCAMIEGAQGALERELKRTDLNILERFNYEEAQTLSKILLKDLKETEQKVKDIQTQ--
General information:
TITO was launched using:
RESULT:
Template:
2JMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16265 for 583 contacts (-27.9/contact) +
2D Compatibility (PS) -9781 + (NN) -1761 + (LL) 300
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -29407.0 ( -50.44 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_2JMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JMH-query.scw
PDB file :
Tito_Scwrl_2JMH.pdb
: