Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAER------------PALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGI---------DGVYAACDADGRVIALLRDEGS-----------RTRSVAVLRPATMHPG |
| 2APO Chain:A ((63-350)) | --LIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHR------------------DASEEDILRVFKEFTGRIYQR----------------------------RIRKIHELELLDKDG----KDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRHLKKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKGVAVDVERVYMDRGTYP- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2APO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -166318 for 1991 contacts (-83.5/contact) +
2D Compatibility (PS) -25406 + (NN) -3362 + (LL) 3340
1D Compatibility (HY) -10400 + (ID) 3900
Total energy: -206046.0 ( -103.49 by residue)
QMean score : 0.553
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