Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAFHTHSGIGVPLRRSNVDTDQIIPA-VFLK-RVTRTGFED-GLFAGWRS---------------DPAFVLNLSPFD---RGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDDVELLWKLIEQSPGLEITAN----LQDR-----IITAA-T--VVLP--FKIDDHSAWRLLEGLDDIALTLRKLDEIEAFEGACAYWKPRTLPAP
1C96 Chain:A ((550-742))
----DLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNK---IH--PVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGS-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1C96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91933 for 1217 contacts (-75.5/contact) +
2D Compatibility (PS) -16535 + (NN) -2351 + (LL) 3268
1D Compatibility (HY) -3200 + (ID) 1600
Total energy: -112351.0 ( -92.32 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_1C96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C96-query.scw
PDB file :
Tito_Scwrl_1C96.pdb
: