Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAEWVGDRP
4AP8 Chain:B ((2-132))
----VEEKSKDVINFTAEKLSVDEVSQLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEI------------
General information:
TITO was launched using:
RESULT:
Template:
4AP8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99580 for 982 contacts (-101.4/contact) +
2D Compatibility (PS) -14398 + (NN) -10184 + (LL) 596
1D Compatibility (HY) -10000 + (ID) 2500
Total energy: -136066.0 ( -138.56 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_4AP8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AP8-query.scw
PDB file :
Tito_Scwrl_4AP8.pdb
: