Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
4RHT Chain:D ((21-197))
-----------------------------------DIKSVLLTAEQIQARIAELGEQIGNDY--------QDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGS----SGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPD---ANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDP----
General information:
TITO was launched using:
RESULT:
Template:
4RHT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145366 for 1211 contacts (-120.0/contact) +
2D Compatibility (PS) -17699 + (NN) -7603 + (LL) 3404
1D Compatibility (HY) -26400 + (ID) 8050
Total energy: -201714.0 ( -166.57 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_4RHT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RHT-query.scw
PDB file :
Tito_Scwrl_4RHT.pdb
: