Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MAVL--PACRLGLVVCVATAV------ITATMVLATPSYACACGAAVTAHGSQATLNHEVALLHWDGTTETIVMQLAMNADTDNVALVVPTPTPAIVTTADQSTFGELDTLSAPLIEHQRHWSLRRGVGASGPQEAAARAPHVLNQVRLGPLEATTLTGGDLSGLQTWLSDNGYAIRPAVSAALDPYVRDG------WAFVAIRLTSTD----LIVGGLDPVRMTFRSSRLVYPMRLSVAAQEPQHVTIFTLSDHRQQRTDADAATQTTHVRFAGDMSTAVRDPLLRELI-GNHGSYLTKVEVD---IYQT---SRISSDFTFGNAPNDDPYRQVVTVYDDVALPPLLLVVVSAIAVGAAGGAVVVVLRRRRRAHTG |
| 2GOP Chain:A ((10-347)) | TFAKFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLK----------NNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFK---RREVPAW--EKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIY--------DGKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLYIWDGEIKPIAKGRH--WIMGFDVDEIVVYLKETATRLRELFTW------DGEEKQLTDYNDPIFAKL------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GOP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -55161 for 2188 contacts (-25.2/contact) +
2D Compatibility (PS) -30009 + (NN) 5346 + (LL) 4048
1D Compatibility (HY) -12400 + (ID) 2500
Total energy: -90676.0 ( -41.44 by residue)
QMean score : 0.043
|
|
|