Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEA-IHLLGLARSFRSARLQPVIQY-EEAACTVFGQVM---------------LANGIASNLGISRERQGEFTIRIDGQNARS--AAQLAETLPLQ-LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVW--QRLQKALRQRNSWLRHGKLDPASQAAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKD------RDLLEVLASSLLRDQQMGHTQAGPQRADLRI---RLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVSQTTTIGSEA- |
| 4XGC Chain:E ((1-458)) | MEAICSSLEPLFPCREAAIETLGELIGDSSETYPSAIYLFGHSGTGKTALTRAFLKECGKRQNVRTAHLNAIECYTTKIMLEILLDSLAPDQGDALKVDNMLDFVEQLRRQAATRVEDQGFLIAVDNAERLRDMDANVLPVLLRLQELTNLNLCVILLSQLPFEKFYNKTGLSEIVCLHLAQYNKAETQRILGSDFQQVRNQLLEQKKRLEICQE-AVTEDFYNNYLNLFLSVFYKACRD-VPELQLTARKCLSTYLEPVLDGTSRLWRHIAGPLRSALTQIYMRIESLELPYYAKFLLIAAFLASHNAAKQDKRLFSTTL-------GPKSFSIDRLLAIFYAILEEKVGLTCNLLSQISTLVH-LNLLSFVSGEQNIMEGSARLQCTIGLEFVLQIGKVVGFNVRQYLCD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48695 for 2500 contacts (-19.5/contact) +
2D Compatibility (PS) -38000 + (NN) -21426 + (LL) 1168
1D Compatibility (HY) -10800 + (ID) 3200
Total energy: -120953.0 ( -48.38 by residue)
QMean score : 0.200
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