Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------MEKFKGALVVG----------ALRLFALLPWRAVQGVGAGIGWLMWKLPNRSREVVR-INLSKCFPELSETELEKLVGQSLMDIGRTLTESACAWIWPPEKSLRYIREVEGMEVLEEALASGDG------LVGITSHLGNWEVL-----NHF----------------YCSYAKPIIFY--RPPKLKAVDELLKKQRVQLG------NRVAPSTPEGILSVIKEVKKGGCVGIPADPEPARTAGLFVPYLGTTALISKFVPQLLSRGKARGVFFHAVRLPD-GSGYK------------------VILEAAPADMYDKD---LEVSVAAMSRE---------------LAKYVRAYP-----------------------SQYMWSMKRFKNRPDGEKKWY--- |
| 4XGC Chain:D ((5-457)) | DRELVSIRRFLKERLQRDYTTLRGYAKERSNVRLLLQRTAEMGESNSLLLLGPRGSGKTTLINSVLADLLPNKSF-GENTLIVHLDGNLHTDDRVALKSITVQMQLENAADGKVFGSFAENLAFLLQCLKSKSVIFILEE---FDLFCAHHNQTLLYNLFDVSQSAQAPICVLGVTCRLDVIELLEKRVKSRFSHRQVFLFPSLRRFEDYVDLCRDLLSLPTGNSLLLAAEKIYNLQNIQSGALYFSRNHFDPGE-YGFSPRLRDAWNKQICKVLATQQARSTLQALHDFDISEAYLKNFLFRLVAHLRPQSPHITAEKMAAVGSQFEGDDKIELLCGLSVLELCLIIAIKHHSQIYDRDSFNFEIIYARFSKFAKVSTTMQAVERSIVLKAFEHLRIAELIMPLTKVQKEFEMHKLALTYSQIHHCMQRYQALPTEVAQWAQSS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -112473 for 1829 contacts (-61.5/contact) +
2D Compatibility (PS) -30201 + (NN) -9677 + (LL) 120
1D Compatibility (HY) -18400 + (ID) 2700
Total energy: -173331.0 ( -94.77 by residue)
QMean score : 0.262
|
|
|