Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDLTLHYLYDPLCGWCYGASPLLAAACEV--TGLDVRLHGGGMMTDANRQPVGAGLRHYVMPHDLRIAQLTGQPFGKDYFDGLLRDTSAVFDSAPPTAAVLAAEALDGLGAAMLARIQRAHYVEGR----RIAERPVLLELGAELGLG-EGFAEAFDACSGEPLRAHFADSRRLMNRLGAAGFPTFALERDGRLQVLDTGRYLGQPDDWRAFLETQLRLAGGSGAVGGAAAPLCRIDGCA
2REM Chain:A ((25-189))
-GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGV----------------------------------------------WDPFARAYLAADVLG-VAKRSHTAMFEAIHEKGSVPIQNV-GPDELAVFYAGYGVQPDRFVATFN---GPEVEKRFQAARAYALKVRPVGTPTIVVNGR----YMV---TGHDFEDTLRITDYLVSRERAASHG--------------
General information:
TITO was launched using:
RESULT:
Template:
2REM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103558 for 1233 contacts (-84.0/contact) +
2D Compatibility (PS) -17361 + (NN) -6680 + (LL) 3400
1D Compatibility (HY) -4800 + (ID) 1250
Total energy: -130249.0 ( -105.64 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_2REM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2REM-query.scw
PDB file :
Tito_Scwrl_2REM.pdb
: