Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGAP--GTNPEELIGAAHAGCFSMALSMMLGEAGLTAE-RIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVLNAKISLDASLDG
1N2F Chain:A ((3-141))
-------TIKALYTATATATGGRDG-RAVS--SDGVLD-VKLSTPREMGGQGGAATNPEQLFAAGYSACFIGAMKFVAGQRKQTLPADASITGKVGIGQ--IPGGF-GLEVELHINLPGMEREAAEALVAAAHQVCPYSNATRGNIDVRLNVSV
General information:
TITO was launched using:
RESULT:
Template:
1N2F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47624 for 904 contacts (-52.7/contact) +
2D Compatibility (PS) -14375 + (NN) -4708 + (LL) 120
1D Compatibility (HY) -3600 + (ID) 1450
Total energy: -71637.0 ( -79.24 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_1N2F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N2F-query.scw
PDB file :
Tito_Scwrl_1N2F.pdb
: