Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLTRLVPLALLLLAGCAGPLPQPDPQMAWVELRSAPANTLL-AERLDGERLSDGRYFQVTPGRHVLEVRFQYELYGGSGGGGGGFGEPVQINCYQQVVYDGFEAGRRYRLEVRPQLRRALALLSDERGEVVARSNFQTSRCPPY
2G9T Chain:A ((9-129))
--ANSTVLSFCAF----------AVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP-----EANMDQESFGG---------ASCCLYCRCHIDHPNFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCS--
General information:
TITO was launched using:
RESULT:
Template:
2G9T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24220 for 881 contacts (-27.5/contact) +
2D Compatibility (PS) -12374 + (NN) -6151 + (LL) -252
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -46497.0 ( -52.78 by residue)
QMean score : 0.279
(partial model without unconserved sides chains):
PDB file :
Tito_2G9T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2G9T-query.scw
PDB file :
Tito_Scwrl_2G9T.pdb
: