Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVGRRAVRVLCYVPPMPRRLRHPLADLRLPRWVPCLALLALSGCSTVSYYGQLASGQFALLRAREPAAAVIADPQRDARLRERLAKAEKARQFASERLGLPDNRSYRLYADIGRPYVVWNVFATP-ELSLQPVTHCFPIAGCVAYRGYYSEAAARAEAARQRALGDDVYVGGVQAYSTLGWFDDPILSSMLRWDDERLATLIFHELAHQKFY------LRDDTAFNESFATFVEQEGTRQWREYRGLPPADGREEKRREQFTALVL--ASRARLEALYA----GP--LDDAAKRAGKAA-EFQRLRREYA-ALSQREWGGESPFKA-WIDAPFNNAKLLPFGLYDQWVAAFAVLFRQ-VGGNWPA----FYARVRALGQLPLAERQAALQRLAAAAP |
| 3U9W Chain:A ((195-453)) | ----------------------------------------------IPCYLIALVVGALESRQIGPRT-LVWSEKEQVEK-----------SAYEFS-ETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP----CLTFVT----------PT-L---------------------LA----------GDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFR--HFNA-LGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEI--FLGFLKAYVEKFSYK---S----------ITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U9W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25637 for 1795 contacts (-14.3/contact) +
2D Compatibility (PS) -24894 + (NN) -5532 + (LL) 9028
1D Compatibility (HY) -7200 + (ID) 1100
Total energy: -55335.0 ( -30.83 by residue)
QMean score : 0.166
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