Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARPLAMIAALGENRAIGIDNRLPWRLPADLKHFKAMTLGKPVIMGRKTWDSLGRPLPGRLNLVVSRQAGLALEGAEVFASLDAALARAEAWAQAEDADELMLIGGAQLYAEALPRAARLYLTRVGLAPEGDAFFPEIDGAAWRLASSIEHAAADDAP--AYAFEVWERR
3JWM Chain:B ((9-167))
----VSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVE------EVFELCKNEEEIFIFGGAQIYDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWK-EVFVEKGLTDEKNPYTYYYHVYEKQ
General information:
TITO was launched using:
RESULT:
Template:
3JWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96142 for 1132 contacts (-84.9/contact) +
2D Compatibility (PS) -16459 + (NN) -1034 + (LL) 1340
1D Compatibility (HY) -16000 + (ID) 3350
Total energy: -131645.0 ( -116.29 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3JWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JWM-query.scw
PDB file :
Tito_Scwrl_3JWM.pdb
: