Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVLKMTDLDLKGKRVLIREDLNVPVKDGQVQSDARIKAALPTLKLALEKGA-AVMVCSHLGRPTEGEFSAENSLKPVAEYLSKALGREVPLLADYLDGVEVK-------AGDLVLFENVRFN-KGEKKNADELAQKYAA--------------LCDVFVMDAFGTAHRAEGSTHGVARFAKVAAAGPLLAAELDALGKALGNPARPMAAIVAGSKVSTKLDVLNSLAGICDQLIVGGGIANTFLAAAGH-KVGKSLYEADLVETAKAIAAK-----VKVPLPVDVVVAKEFAESAVATVKAIAE-VADDDMILDIGPQTAAQFAELLKTSKTILWNGPVGVFEFDQFGEGTRTLANAIADSAA---FSIAGGGDTLAAIDKYGIAERISYISTGGGAFLEFVEGKVLPAVEILEQRAKG |
3C3C Chain:B ((10-419)) | ---LTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCV-----EKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQK--AGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGG-------------DKVSHVSTGGGASLELLEGKVLPGVDALSNI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C3C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -222814 for 3076 contacts (-72.4/contact) +
2D Compatibility (PS) -38029 + (NN) -4791 + (LL) 2064
1D Compatibility (HY) -34800 + (ID) 7850
Total energy: -306220.0 ( -99.55 by residue)
QMean score : 0.501
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