Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MADETELKRLYWHSRRGMLELDVLLVP-----FVQEVYPGLDAEDQARFR---KLLECEDQDMFGWFMQRGEPEDADLRRMVRMILDRVQPD
2QKV Chain:A ((574-665))
GIPRNSLEKFNVDLMKKAGK-ELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKP-
General information:
TITO was launched using:
RESULT:
Template:
2QKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19905 for 473 contacts (-42.1/contact) +
2D Compatibility (PS) -8369 + (NN) 3974 + (LL) 100
1D Compatibility (HY) -800 + (ID) 700
Total energy: -25700.0 ( -54.33 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_2QKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QKV-query.scw
PDB file :
Tito_Scwrl_2QKV.pdb
: