Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQVSVYRYNPDKDAAPYMQDFQVDTN-GKDVMVLDVLALIKEQDEGFSYRRSCREGVCGSDGMNINGKNGLACITPLSAAGLKGGKLVIRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQND-TPAPAIERLQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKTEERLASLDDPFSVFRCRGIMNCVNVCPKGLNPTKAIGHVRNMLLQSGT
2WDQ Chain:F ((3-235))
-LEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
General information:
TITO was launched using:
RESULT:
Template:
2WDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129628 for 1802 contacts (-71.9/contact) +
2D Compatibility (PS) -24645 + (NN) -14089 + (LL) 208
1D Compatibility (HY) -30000 + (ID) 8300
Total energy: -206454.0 ( -114.57 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_2WDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WDQ-query.scw
PDB file :
Tito_Scwrl_2WDQ.pdb
: