Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAMALTLAGLLAAPSLGFAAAPDAVMVFARQGDKGSVSVGDKHFRTQAFK----VRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFASEDDAVYGA--SLVRLSDRCK--
3Q87 Chain:A ((1-125))
----MKPFLLGLLKCKRCSF---MTKLILECEKAESNDVDV--KIFNKHMFTENGGERLKSLVNSLRDFHGREL--SEQDISSFVENPGDDEKIKEFLF-GIDVVEGSLRCDMCGLIYPIKGSIVETVDTVESK
General information:
TITO was launched using:
RESULT:
Template:
3Q87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34003 for 790 contacts (-43.0/contact) +
2D Compatibility (PS) -11545 + (NN) 1012 + (LL) 716
1D Compatibility (HY) -5600 + (ID) 1300
Total energy: -50720.0 ( -64.20 by residue)
QMean score : 0.171
(partial model without unconserved sides chains):
PDB file :
Tito_3Q87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q87-query.scw
PDB file :
Tito_Scwrl_3Q87.pdb
: