Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRCRNCGERPASEGHICMVCKRRSDIDPYKALIAMALLVYCGVSLAAYLKPHMPAPPPTAGSSVQPAEELAQRARQATLEQRGI
2APO Chain:B ((7-27))
-KKCPKCGLYT--LKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALKNKN-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2APO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6404 for 104 contacts (-61.6/contact) +
2D Compatibility (PS) -2094 + (NN) -114 + (LL) 2836
1D Compatibility (HY) -800 + (ID) 300
Total energy: -6876.0 ( -66.12 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_2APO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2APO-query.scw
PDB file :
Tito_Scwrl_2APO.pdb
: