Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPDTSPDLPAMSPLAVYRQAVEQRGFAPDEAQRRAAEALERCFQALHEAHRHGAIQGVYLWGPVGRGKTWLMDHFYQCLRVPARRQHFHHFMQWVHQRQFELTGTADPLRALARELARDVRVLCFDELFVSDIGDAILLGSLLRIMFEEGVVLVATSNQPPEQLYADGFNRERFLPAIEAIQRHMAVVAVDGGQDHRLHPGRAEQRYWVVEAGQASGFAELFARLSAGEAASTQPIELGHRPLAVHRHSESVLWCSYAQLCEAPLSALDFIGLCDRYRAILMDDLPCLSASQREGRIARGTEDGAQLVEAGDRELPQLSVHDDGVRRFIALVDECYDRKVPLYLEARVPLEALYTEGYLAFAFRRTLSRLREMQLARFGSDSAG |
| 3WDM Chain:A ((2-260)) | -----VNIPKSHP--------------------RYWSLYYR--EKIIEGMEKGMTA-------------------KAGLIAHGRGEAFDYLI-----------GERTIEPAERAMRAAVAKFLLAEHPVISVNGNVAAL-------VPKETIELAKALNAKLEINLFYRTEERVRTIAEELRKYDPEIEILGINPTKRIPGLEHERGKVDENGIWK--ADVVLV----------PLEDGDRTEALVRMGKFVVTV----------------------------DLNPLSRSARMA---------------------DITIVDNIVRAYPRMVELAREMKDYSREELLKIVGEYDNGKTLSDVLLHIRDRLTRLAEEGIWRRKEL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WDM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -63184 for 2191 contacts (-28.8/contact) +
2D Compatibility (PS) -28100 + (NN) -15224 + (LL) 8960
1D Compatibility (HY) -400 + (ID) 2500
Total energy: -100448.0 ( -45.85 by residue)
QMean score : 0.214
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