Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRRQQSGFTLIEIMVVVVILGILAALVVPQVMSRPDQAKVTVAKGDIKAIAAALDMYKLDNFAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSLGADGKEGGSDNDADIGNWDN
3G20 Chain:B ((5-116))
-------------------------SLVVPNLMGNKDKADRQKVMSDLVALESTLDMYRLDNNRYPTTEQGLRALVSKPTVQPEPRNYRQDGYIRRLPQDPWGGDYQLLNPGQYSDIDIFSPGPDGVPNTED---DIGNW--
General information:
TITO was launched using:
RESULT:
Template:
3G20.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2861 for 759 contacts (-3.8/contact) +
2D Compatibility (PS) -12286 + (NN) -10028 + (LL) 2980
1D Compatibility (HY) -9200 + (ID) 2800
Total energy: -34195.0 ( -45.05 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3G20.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G20-query.scw
PDB file :
Tito_Scwrl_3G20.pdb
: