Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNVMLITGASRGIGAATALLAAERGYAVVLNYLRNREAAEALRQRIERQGGEALAVAADVAEEGDVERLFASIDERFGRLDVLVNNAGMLEAQTRLENIDAARLHRVFATNVTGSFLCAREAVKRLSTRHGGRGGSIVNVSSMASRLGSPNEYIDYAAAKGAIDSMTIGLAREVAAEGIRVNAVRPGLIDTEIHASG-GEPGRIERLKGGIPLGRGGTAEEVARAILWLASDEASYSTGTFIDVSGGR
1G6K Chain:E ((9-249))
---VVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLANPVSSHE-MSLSDWNKVIDTNLTGAFLGSREAIKYFV--ENDIKGTVINMSSVHEKIPWP-LFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGG-
General information:
TITO was launched using:
RESULT:
Template:
1G6K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117153 for 2000 contacts (-58.6/contact) +
2D Compatibility (PS) -26263 + (NN) -12472 + (LL) 320
1D Compatibility (HY) -17600 + (ID) 4800
Total energy: -177968.0 ( -88.98 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1G6K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G6K-query.scw
PDB file :
Tito_Scwrl_1G6K.pdb
: