Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMKKLLLVATLMAGAAQATAAEKLYLFNWND----YIAEDTLKRFEQQCGCELVQEFYSGTEEMMAKLAA--GASGYDVIIPTQNAVEALIRKGDLLELDKSRLANLSNEAAGYLDKDFDKGNRYSLPYAFTTTLVGYNKTELDKLGIDPADWSVIFDPAVLEKIKGRVT----VMDDPQE-LFGAALKYLGHSANDTDPQHWKEAQALILAAKPYWAAFN--SSSYIKELTLGNIWVAHGYSSDMYQARADAEAAGRAFKVDFALPRQGAVLAIDNMVIHKGSKNPDLAYRFIDFMLDGRNASELTNQIGTGTPNAAALPFIKPEIKTLAALFPDATTQARLEP--LKDLNSRQRRALNKLWTEIKLR |
3PU5 Chain:A ((3-324)) | ------------------LADDHIYVTSSGGSFLENVRKHMAEPFEKQSGVKVTLVPGTN-PAHALKILSSRGTPPYDVAAFGGNDMYRLIRAKKLAQVDEKSVPSLADVPEKFKA---D-WEGCGSLYDYSSVGIAYRPDKIQG---GVKSWKEFVERT----VAGEFGKQVFFNNLSSNVRGAEVLSMFGK-IYGSGYGDIEASIATLERMKPHIFKFFTAFNDPVVLLTSGEGAIGPGWDGRTFIAE-DST----KGMVKWVDPTEGAVSSGPVMAVVKGGK-EDLAKAFMNYALGEEAQKAFCEAMYYGAVNRKVQ--YSEKLKHRLP--S----IDSVQLVDTALLI-KNMSALLDLWNKRIA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PU5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -106856 for 2598 contacts (-41.1/contact) +
2D Compatibility (PS) -33721 + (NN) -15956 + (LL) 4144
1D Compatibility (HY) -8400 + (ID) 2850
Total energy: -163639.0 ( -62.99 by residue)
QMean score : 0.481
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