Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRFMALALCFVLPTAAHAASLK--DFELSKMLEKVAKESSVGTPRAINEDILDQGYTVEGNQLINHLSVR-ASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAI-LTYSFTEYKTNQPVATERFDAGSCRIQGKK
1WPI Chain:A ((1-133))
MSFWKTL------QRQPRTISLFTNDIASNIKSQKCLQLLKGDVSHRFDVEIANRFPTWDQLQYMRTSCPQGPVSLQRQIPKLDSVLKYKHTDPTFGMDLQKCVQRGLWNPKEALWVDWENKLVGNEPADIDKYIIQRK-
General information:
TITO was launched using:
RESULT:
Template:
1WPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 27266 for 1009 contacts (27.0/contact) +
2D Compatibility (PS) -13261 + (NN) -2156 + (LL) 940
1D Compatibility (HY) -1200 + (ID) 1150
Total energy: 10439.0 ( 10.35 by residue)
QMean score : -0.002
(partial model without unconserved sides chains):
PDB file :
Tito_1WPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WPI-query.scw
PDB file :
Tito_Scwrl_1WPI.pdb
: