Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK
3EJ0 Chain:A ((24-196))
--FSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHKEITDGVANFKK
General information:
TITO was launched using:
RESULT:
Template:
3EJ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88348 for 1366 contacts (-64.7/contact) +
2D Compatibility (PS) -18919 + (NN) -10978 + (LL) 180
1D Compatibility (HY) -20000 + (ID) 5400
Total energy: -143465.0 ( -105.03 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_3EJ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EJ0-query.scw
PDB file :
Tito_Scwrl_3EJ0.pdb
: