Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLVLFCCLWLLPGVASAAPSVGEIRVVS-ETWTRYTQED---GRGVAWDLLRAVYEPAGVRLRIANEPYTRAVGLVLRGEADAWV-GAYRGEIDE--ALYPRWPYDVDPIAVLSLKDNPPPPLEGLSRFRLSWMRGYAFARYFPT----LTPHSELQRRTSALPMLLNHRVDYFIDSRPELEEMLAGAGALAAEYRI-T---DVTRLPLYLGFSDSPRGRELLALFDRRMRQLHASGELERIFARWNWPYAPLKAILPPKE
2PVU Chain:A ((38-267))
-------------------GATKKKVVVGTDAAFAPFEYMQKGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSD-PYFEATQVILVKQGSPVKNALDLKGKTIGVQNATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNP--NKKLQVIEDPKNFASEYYGMIFPK---NSELKAKVDEALKNVINSGKYTEIYKKWFGKEPKL--------
General information:
TITO was launched using:
RESULT:
Template:
2PVU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133286 for 1721 contacts (-77.4/contact) +
2D Compatibility (PS) -23579 + (NN) -14054 + (LL) 2980
1D Compatibility (HY) -8000 + (ID) 1800
Total energy: -177739.0 ( -103.28 by residue)
QMean score : 0.312
(partial model without unconserved sides chains):
PDB file :
Tito_2PVU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PVU-query.scw
PDB file :
Tito_Scwrl_2PVU.pdb
: