Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDTGRRILLNCDMGESFGAWRMGDDVHSMPLVDQANLACGFHAGDPLTMRRAVELAVRHGVSIGAHPAYPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLALADNGRELELADEADVPLLFEAFADRAYLPDGRLAPRRLGGAVHHDPQRIIEQALAIARGEAFPDYDGNPLRLTADSLCVHGDNPQSLAVLRRLRAALDSL
1V6T Chain:A ((1-242))
-----MRVDLNSDLGESFGRYKLGLDEEVMKYITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNS---RVADIAEEMGLKVAHEVFADRAYNPDGTLVP-----AVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITSYIRKVLEE-
General information:
TITO was launched using:
RESULT:
Template:
1V6T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181169 for 2066 contacts (-87.7/contact) +
2D Compatibility (PS) -26358 + (NN) -13977 + (LL) -188
1D Compatibility (HY) -19600 + (ID) 5150
Total energy: -246442.0 ( -119.28 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_1V6T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V6T-query.scw
PDB file :
Tito_Scwrl_1V6T.pdb
: