Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPV-SFVQDNHSRSARGVLRGLHYQIRQ-AQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDAPLLSEKDRQGKAFADADCFP
1OFN Chain:B ((1-179))
MQARKLAVDGAIEFTPRVFADDRGLLILPYQEEAFVEAHGGPLFRVAQTIHSMSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYMLSRSYVTQDELALSALDPALGLPIDIGVEPIVSDRDRVAITLAEA----
General information:
TITO was launched using:
RESULT:
Template:
1OFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84391 for 1397 contacts (-60.4/contact) +
2D Compatibility (PS) -18342 + (NN) -3227 + (LL) -28
1D Compatibility (HY) -12800 + (ID) 3200
Total energy: -121988.0 ( -87.32 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_1OFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OFN-query.scw
PDB file :
Tito_Scwrl_1OFN.pdb
: