Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATAPRPLREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQG--GEVIG-LVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEG-QREACAAGRFVHVFVERRSSR--PVAIPQELRDALAALQSSAQ
2W3X Chain:A ((4-143))
----------PRYYEYRHVVGFEETNLVGNVYYVNYLRWQGRCREMFLYE-HAPEILDELRADLKLFTLKAECEFFAELAPFDRLAVRMRLVELTQTQMELGFDYLRLGGDDLLVARGRQRIACMRGPNGRTEPVRVPAGLVRAFAPFRSA--
General information:
TITO was launched using:
RESULT:
Template:
2W3X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97438 for 932 contacts (-104.5/contact) +
2D Compatibility (PS) -14065 + (NN) 1080 + (LL) 1112
1D Compatibility (HY) -10000 + (ID) 1300
Total energy: -120611.0 ( -129.41 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_2W3X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W3X-query.scw
PDB file :
Tito_Scwrl_2W3X.pdb
: