Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MITFLPIIFSILIVVTFVIGNFA-NGFIALVNSIEWFKRQKISFADQILTALAVSRVGLLWVLVLNWYATELNPAFNSIEVRITAYNVWA-VINHFSNW-LATSLSIFYLLKIANFS---------------------NLIFLHLKR---------RVKSVVLVILLGPLLFLVCHLFVINMNQIIWTKEYEGNMTWKIKLRSAMYLS------------NTTVTILANLVPFTLTLISFLL----LICSLCKHLKKMQLHGKGSQDPSMKVHIKALQTVTSFLLLCAIYFLSIIMSVWSF-ESLENKPVFMFCEAIAFSYPSTHP--------FILIWGNKKLKQTFLSVLWHVRYWVKGEKPSSS |
| 3J6V Chain:E ((89-430)) | -------FFTKLTADELWKGALAETGAGARKGRGKRTKRKRRKDLNRG-QIIGEGRRGFLWPGLNAPLMKSGAIQTITQRSKEEQEKVEADMVQQREEWDRKRKMKVKRERGWSGNSWGGISLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGRGAAGFAIGKA--------TERADAFRKAKNRAVHYLHYIERYEDHTIYHDISLTFKRTHIKMKKQPRGYGLRCHRAITTICRLIGIKDMYAKVSGSVNMLSLTRGLFQGLSRQETHQQLADKKSLHVVEFREECGPLPIV---VASPQGALRKDPEPEDEVPDIKLDWDDVKAVQGMKRSVW------SGLKRAAT |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J6V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163234 for 1839 contacts (-88.8/contact) +
2D Compatibility (PS) -28673 + (NN) 7841 + (LL) 3112
1D Compatibility (HY) 11200 + (ID) 2400
Total energy: -172154.0 ( -93.61 by residue)
QMean score : 0.060
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