Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPP----FLIQILVENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFEST-SSGTTFWCVLPYERQEEE |
| 1YSR Chain:A ((6-149)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPVDITDLLDRAAHDAARIY----PDLDVSLVPSPT-CIIVGLPAGLRLAVDNAIANAVKHG-----GATLVQLSAVSS-RAGVEIAIDDNGSGVPEGERQVVFERFS-------LGLALVAQQAQLHGGT---ASLENSPLGGARLVLRLPGP----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YSR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -74737 for 1050 contacts (-71.2/contact) +
2D Compatibility (PS) -13923 + (NN) -9625 + (LL) 37364
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -65121.0 ( -62.02 by residue)
QMean score : 0.447
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