Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDMNFDLYMNGVVEQARNEIESAGYEQLTTAEDVDKVLK--QDGTTLV-MINSVCGCAGGIARPAASHALHYDVLPDRLVTVFAGQDKEATQ-RAREYFEGYAPSSPSFALVKDGKITEMIERHQIEGHDVMNVINQLQTLFNKYCEER
1GH2 Chain:A ((3-106))
-----------------------GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCL-RIAPAFSSMSN--KYPQ-A--VFLEVDVHQCQGTAATN---NISATPTFQFFRNKVRID-----QYQGADAVGLEEKIKQH--------
General information:
TITO was launched using:
RESULT:
Template:
1GH2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41860 for 698 contacts (-60.0/contact) +
2D Compatibility (PS) -10723 + (NN) -5245 + (LL) 3324
1D Compatibility (HY) -1600 + (ID) 1000
Total energy: -57104.0 ( -81.81 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_1GH2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GH2-query.scw
PDB file :
Tito_Scwrl_1GH2.pdb
: