Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDNYTYSELLKSLQN-KCDNIALIIKPEKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKMKNSLDESVELFELAQNDSD-EVTLSLLYE-EAPTLEHSVQKVEIEIMLSGENDA-SNAIITIQPGAGGTESQDWASILYRMYLRWAERKSFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLVRISPFDA-NAKRHTSFASVQISPELDDDID-IEIDEKDVRYDYYRASG-AGGQHVNKTESA-VRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWGH-QIRSYVLAP--YQQVKD-ARSNI-AYSNVEAILDGDIDAILEGVLIAKA----- |
| 4DVG Chain:B ((8-312)) | --EVVQQKFAIVAKEMKIDNPELI-----------------TIPNQWKLVQEYEKKQKKDIRIQLNAQKTGNWRNAITDPKYLADLLKTRDDMD----LLNEMVVVFRSSSVSFIKTFVSVGGLANLMAIYKKKIEAENS---------------NTAIDEERKCCEVLRYVFAEEDATVALI------------EIDGGVELLLK-----GMNSKRITPDNQLDILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSNLVSEGVDMKKFLSFFSLFSKS-----KSEKFKHASLVLINNLIDQPELEH----------------RMDVRNSFIEIGLVNELENMKNTEWMKIDKIKDSINDFFDSWEEDKKEVESRFDDL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4DVG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 45167 for 2011 contacts (22.5/contact) +
2D Compatibility (PS) -30062 + (NN) -5827 + (LL) 5108
1D Compatibility (HY) -5600 + (ID) 2400
Total energy: 6386.0 ( 3.18 by residue)
QMean score : 0.216
|
|
|