Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --------------MGCSFIFKKVRVYSKMLVALGLSSVLIGCAMNPSAETKKPNDAKNQQPVQTHER-MTTSSEH---------VTPLDFNYPVHIVQAPQNHHVVG---ILMPRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQVLRF-QDEKALNVQD-KK-KIFSVLDLKGWVGILEDLKMNLKDPNSP-NLDTLVDQS-SGSVWFNFYEPESNRVV------------------------HDFAVEV-GTFQAITYTYTSTNNASGGFNSSKSVIHE------------------NLDKNREDAIHKILNRMYAV-VMKKAVTELTKEN--IAKYRDAIDRMKGFKSSMPQKK---------------- |
3DTY Chain:A ((7-398)) | RRIPQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGH--QLIEQAREMIAAGELGDVRMVHMQFAHGFHSAGPSYVLGDVGTHPLYLSEVMLPDLKIKRLMCSRQSFVASRAPLEDNAYTLMEYEGGAMGMVWSSAVNAGSMHGQKIRVIGSRASLEWWDERPNQLSFEVQGQPAQILERGMGYLHPNALIDDRIGGGHPEGLFEAWANLYYRFALAMDATDRSDTQALSAVRYPGIDAGVEGVRWVERCVLSADNDSIWVAYEGHHHHHH |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DTY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -22684 for 2061 contacts (-11.0/contact) +
2D Compatibility (PS) -28468 + (NN) 6039 + (LL) 168
1D Compatibility (HY) 6400 + (ID) 1350
Total energy: -39895.0 ( -19.36 by residue)
QMean score : 0.056
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