Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLIVQKYGGTSMGSIERIHNVAQRVLESVKLGHQVVVVVSAMSGETDRLLEFGKNFSHNPNKREMDRIVSAGEWISSAALSMALERYGHRAISLSGKEAGILTSSHFQNAVIQSIDT-QRITELLEKNYIVVIAGFQGADIQGETTTLGRGGSDLSAVALAGALKAHLCEIYTDVDGVYTTDPRIEEKAQKIAQISYDEMLELASMGAKVLLNRSVELAKKLSVKLVTRNSFN-HSEGTLIVAEKDFKGERMETPIVSGIALDKNQARVSM--EGVEDRPGIAAEIFGALAEYRINVDMIVQTIGRDGKTDLDFTIVKTQIEETKQAL-------KPFLAQ--MDSIDYDENIAKVSIVGVGMKSHSGVASIAFKALAKDNINIMMIS--TSEIKISVLIDIKYAELAVRTLHAVYQLDQ |
2HMF Chain:B ((73-466)) | ---------------EKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVL-IGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDME-----MSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQG---SSETNISLVVSEEDVDKALKALKREFGDF---LNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182119 for 3000 contacts (-60.7/contact) +
2D Compatibility (PS) -40151 + (NN) -10832 + (LL) 1588
1D Compatibility (HY) -26800 + (ID) 6750
Total energy: -265064.0 ( -88.35 by residue)
QMean score : 0.448
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