Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKPIEEIGEEIGAKVEKVARKTGNVAGTAAKLSVYSSIWAVKTGVNKTRAFAQGFKQGWSGK
2HSQ Chain:B ((1-23))
---AIYEKAKEVSSALSKVLSKIDDT-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2HSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 318 for 83 contacts (3.8/contact) +
2D Compatibility (PS) -2508 + (NN) -1902 + (LL) 2668
1D Compatibility (HY) -800 + (ID) 300
Total energy: -2524.0 ( -30.41 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_2HSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HSQ-query.scw
PDB file :
Tito_Scwrl_2HSQ.pdb
: