Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADISKELIEQLVKQVVLEKMGQSSKHVDPSGILSVKLPVVKVSEEDRLDTGNPSDVVYTKDLVTLEE--SKRLGFGLMEMKDT---TFDWFLDYDEVDYVIEGRLDVVIDGRTVSAGPGEIIFIPKGSQIKFSVTG--EARFIYVTYPADWQS
1O4T Chain:A ((40-131))
--------------------------------------------------------EVEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAVII------
General information:
TITO was launched using:
RESULT:
Template:
1O4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40130 for 541 contacts (-74.2/contact) +
2D Compatibility (PS) -9369 + (NN) -2275 + (LL) 3808
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -50866.0 ( -94.02 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_1O4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O4T-query.scw
PDB file :
Tito_Scwrl_1O4T.pdb
: