Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEVHFVGAGPGDKELITLKGYQLLKEADVVIYAGSLVNPELLEYCKASCEIHNSA---SMNLIEIIDCMEAGVTAGKEVVRLQTGDFSIYGSIREQVEEMKKRSIPFTCTPGVSSFLGAASSFGVEYTVPEVSQSVIITRMAGRTPVPSRESLRSYAAHQTSMVIFLSVQGIRKVVSELIKGGYKPETPAAVIYKATWAEEKKVTGTLEDIAEKVTEAGITKTALIMVGDFLGEEFYYSKLYDKDFKHEYR
1VA0 Chain:A ((1-225))
-GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLYD-RLVDERVLALAPGE--KVYVGKEE--KQEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS--GLPLTH--RGLAHGFAAVSGVLEGGG--YPDLRPFA-RVPTLVVLMGVGRRVWIAKELLRLGRDPREPTLFVERASTPKERRVHARLEEVAEGK--VEVRPPALWILGEVVRVF----------------
General information:
TITO was launched using:
RESULT:
Template:
1VA0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141711 for 1825 contacts (-77.6/contact) +
2D Compatibility (PS) -23544 + (NN) -4880 + (LL) 1936
1D Compatibility (HY) -16800 + (ID) 3150
Total energy: -188149.0 ( -103.10 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1VA0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VA0-query.scw
PDB file :
Tito_Scwrl_1VA0.pdb
: