Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTPKK-ILSDMTNGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFGTDMNGTPSHKW---NTKGKLALVIGNEGKGISHNIKKQVDEMITIPMN----GHVQSLNASVAAAILMYEVFRNRL
2I6D Chain:A ((20-257))
---KYRLREQAFAVEGPKLVGEMLPFYRCRMLVGTAAML-R------AVSTPHDAEVVELPESFDFKRISTQTTPQPLMAVFD-LPAEPEP--------VVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSV---ESLNVAIATAILCSEWRRRS-
General information:
TITO was launched using:
RESULT:
Template:
2I6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117217 for 1824 contacts (-64.3/contact) +
2D Compatibility (PS) -24351 + (NN) -5732 + (LL) 1524
1D Compatibility (HY) -10800 + (ID) 2950
Total energy: -159526.0 ( -87.46 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_2I6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2I6D-query.scw
PDB file :
Tito_Scwrl_2I6D.pdb
: